PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000294489
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 260aa    MW: 30334.7 Da    PI: 4.8729
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000294489genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48e-3055112359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs++pr+YYrC+++ gC +kk+vers++d +v++itY+ +Hnh+
  MDP0000294489  55 DLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLAKKQVERSKTDASVLIITYTCSHNHS 112
                    89***********************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2947113IPR003657WRKY domain
SuperFamilySSF1182901.44E-2451114IPR003657WRKY domain
SMARTSM007748.0E-3453113IPR003657WRKY domain
PfamPF031062.6E-2455111IPR003657WRKY domain
PROSITE profilePS5081130.46955114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDETLSPEPD SDVSKELRPE TQSSKRRKVA HEKTVVTVKI GANXGKLKNE GPPFDLWSWR  60
KYGQKPIKGS PYPRGYYRCS TSKGCLAKKQ VERSKTDASV LIITYTCSHN HSGPPDLNVI  120
STTQQEHDQK QEXEQEQEQE QEQEQEXDQK QDQKQEQEQE HRKLEEHFHY IESPIRFSQE  180
EEHIFIAHDT SFEFLLDEKQ EPLSLSYSQM MSFSTPKLSE ENNDFFDELE ELPTFSSFPS  240
FMRRTNNLSF GLERIPSVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18551151675WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.304851e-151fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369035.10.0PREDICTED: probable WRKY transcription factor 35
TrEMBLD9ZJE81e-142D9ZJE8_MALDO; WRKY domain class transcription factor
STRINGPOPTR_0014s11490.12e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-34WRKY family protein